MBIC Image Analysis/Processing Server (Coming Soon)

ImageJ/FIJI
Free open source Java image processing program

Zen Lite (Zeiss CZI Files)
Free software to view CZI/standard files and basic image analysis and processing

Imaris Pro V9.6 Software
Schedule on ClusterMarket
3/4D image visualization and analysis software

Pittsburgh SuperComputing Center: Bridges
Linux (Matlab, Jupyter Notebook, ImageJ,MCell)

Brain Imaging Library
National public resource for depositing, analyzing, mining, sharing, and interacting with large brain image datasets

CellProfiler
Free cell image analysis software